Isabel Segura Bedmar
Isabel
Segura Bedmar
...
...
916245961
Leganés
Sabatini
2.2.B.05
Profesor Visitante
Ciencia de la Computación e Inteligencia Artificial

Resources: The DDI corpus

Doctoral Thesis: Application of Information Extraction techniques to pharmacological domain: Extracting drug-drug interactions. Advisor Paloma Martínez. April 2010.

International Journals

  • Isabel Segura-Bedmar, Paloma Martínez, Ricardo Revert , Julián Moreno-Schneider, (2015). Exploring Spanish Health Social Media for detecting drug effects, BMC Medical Informatics and Decision Making (JCR Science, Impact Factor (2014): 1.83, Area: Medical Informatics, Rank: 12/24, Q3), June, 2015, 15, Supplement S2, pp: doi:10.1186/1472-6947-15-S2-S6.

  • María Herrero Zazo, Isabel Segura-Bedmar, Janna Hastings, Paloma Martínez, (2015). DINTO: Using OWL ontologies and SWRL rules to infer drug-drug interactions and their mechanisms (DOI: 10.1021/acs.jcim.5b00119), June, 2015, Journal of Chemical Information and Modeling (JCR Science, Impact Factor (2014): 3,738, Area: Computer Science, Information Systems, Rank: 7/139, Q1), ACS.

  • María Herrero Zazo, Isabel Segura-Bedmar, Janna Hastings, Paloma Martínez, (2015). Application of Domain Ontologies to Natural Language Processing: A Case Study for Drug-Drug Interactions, DOI: 10.4018/IJIRR.2015070102;, June, 2015, International Journal of Information Retrieval Research (IJIRR), 5, 3, url.

  • Isabel Segura-Bedmar, Paloma Martínez, María Herrero Zazo, (2014). Lessons learnt from the DDIExtraction-2013 shared task, January, 2014, Journal of Biomedical Informatics (JCR Science, Impact Factor (2014): 2,194, Area: Computer Science, Interdisciplinary Applications, Rank: 21/102, Q1), Elsevier, 51, pp: 152-164.

  • Isabel Segura-Bedmar, Paloma Martínez, (2014). Special Issue on Mining the Pharmacovigilance Literature, Journal of Biomedical Informatics (JCR Science, Impact Factor (2014): 2,194, Area: Computer Science, Interdisciplinary Applications, Rank: 21/102, Q1), June, 2014, 49, pp: 1-2.

  • César de Pablo-Sánchez, Isabel Segura-Bedmar, Paloma Martínez, Ana Iglesias, (2013). Lightly supervised acquisition of named entities and linguistic patterns for multilingual text mining, April, 2013, Knowledge and Information Systems Journal (JCR Science, Impact Factor (2013): 2,639, Area: Computer Science, Artificial Intelligence, Rank: 21/121, Q1), Springer London, 35, 1, pp: 87-109.

  • María Herrero Zazo, Isabel Segura-Bedmar, Paloma Martínez, Thierry Declerck, (2013). The DDI corpus: An annotated corpus with pharmacological substances and drug-drug interactions, Journal of Biomedical Informatics (JCR Science, Impact Factor (2013): 2.482, Area: Computer Science, Interdisciplinary Applications, Rank: 17/102, 1er Cuartil)., October, 2013, 46, 5 , pp: 914-920.

  • Isabel Segura-Bedmar, Paloma Martínez, César de Pablo-Sánchez, (2011). A linguistic rule-based approach to extract drug-drug interactions from pharmacological documents, March, 2011, BMC BioInformatics (JCR Science, Impact Factor (2011): 2,751, Area: Mathematical & Computacional Biology, Rank: 7/47, Q1), ISSN: 1471-2105, 12(Suppl 2):S1.

  • Isabel Segura-Bedmar, Paloma Martínez, César de Pablo-Sánchez, (2011). Using a Shallow Linguistic Kernel for Drug-Drug Interaction Extraction, October, 2011, Journal of Biomedical Informatics (JCR Science, Impact Factor (2011): 1,792, Area: Computer Science, Interdisciplinary Applications, Rank: 30/99, Q2), , Volume 44, Issue 5, pp: 789 - 804.

  • Isabel Segura-Bedmar, Paloma Martínez, César de Pablo-Sánchez, (2010). Extracting drug-drug interactions from biomedical texts., May, 2010, BMC BioInformatics (JCR Science, Impact Factor (2010): 3,029, Area: Mathematical & Computacional Biology, Rank: 4/37, Q1), ISSN: 1471-2105, 11, Suppl 5.

  • Isabel Segura-Bedmar, Mario Crespo, César de Pablo-Sánchez, Paloma Martínez, (2010). Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents. , April, 2010, BMC BioInformatics (JCR Science, Impact Factor (2010): 3,029, Area: Mathematical & Computacional Biology, Rank: 4/37, Q1), ISSN: 1471-2105, 11, (Suppl 2).

  • Roxana Danger, Isabel Segura-Bedmar, Paloma Martínez, Paolo Rosso, (2010). A comparison of machine learning techniques for detection of drug target articles, December, 2010, Journal of Biomedical Informatics (JCR Science, Impact Factor (2010): 1,724, Area: Computer Science, Interdisciplinary Applications, Rank: 27/97, Q2). , 43, Issue 6, pp: 902-913.

  • Isabel Segura-Bedmar, Paloma Martínez, María Segura-Bedmar, (2008). Drug Name Recognition and classification in biomedical texts. , September, 2008, Drug Discovery Today (JCR Science, Impact Factor (2008): 6,618, Area: Pharmacology & Pharmacy, Rank: 11/219, Q1). , 13, 17-18, pp: 816-823.

International Conferences

  • Lourdes Moreno, Paloma Martínez, Isabel Segura-Bedmar, Ricardo Revert , (2015). Exploring language technologies to provide support to WCAG 2.0 and E2R guidelines, 16th International Conference Interacción 2015 , Barcelona, Spain, September, 2015, Asociación Interacción Persona Ordenador (AIPO).

  • Isabel Segura-Bedmar, Victor Suarez-Paniagua, Paloma Martínez, (2015). Exploring Word Embedding for Drug Name Recognition, Sixth Workshop on Health Text Mining and Information Analysis, Lisboa, Portugal, September, 2015.

  • Isabel Segura-Bedmar, Victor Suarez-Paniagua, Paloma Martínez, (2015). Combining Conditional Random Fields and Word Embeddings for the CHEMDNER-patents task, Proceedings of the Fifth BioCreative Challenge Evaluation Workshop (BIOCREATIVE V), Sevilla, September, 2015.

  • Victor Suarez-Paniagua, Isabel Segura-Bedmar, Paloma Martínez, (2015). Word Embedding clustering for Disease Named Entity Recognition, Proceedings of the Fifth BioCreative Challenge Evaluation Workshop (BIOCREATIVE V),, Sevilla, Spain, September, 2015.

  • Isabel Segura-Bedmar, Ricardo Revert , Paloma Martínez, (2014). Detecting drugs and adverse events from Spanish social media streams, Gothenburg, Sweden, April, 2014, Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis (Louhi), Association for Computational Linguistics, pp: 106-115.

  • Isabel Segura-Bedmar, Santiago Peña-González, Paloma Martínez, (2014). Extracting drug indications and adverse drug reactions from Spanish health social media, Proceedings of the BioNLP 2014 workshop, USA, June, 2014, Association for Computational Linguistics, pp: 98-106.

  • Lourdes Moreno, Yolanda González-Maroto, Isabel Segura-Bedmar, Paloma Martínez, (2014). Women in computer science: Survey on the perception of the women's participation in STEM studies, INTERACCION 2014. XV International Conference on Human Computer Interaction, Puerto de la Cruz, Tenerife, Spain, September, 2014, Interacción '14 Proceedings of the XV International Conference on Human Computer Interaction, ACM New York, ISBN: 978-1-4503-28, 82.

  • María Herrero Zazo, Isabel Segura-Bedmar, Paloma Martínez, (2013). Corpus DDI: Un corpus anotado con fármacos e interacciones farmacológicas., V International Conference on Corpus Linguistics, Alicante, España, March, 2013.

  • María Herrero Zazo, Isabel Segura-Bedmar, Paloma Martínez, (2013). An Ontology for formal representation of Drug Drug Interaction Knowledge, 6th International Biocuration Conference , BIOCURATION 2013, Cambridge, UK, April, 2013.

  • Isabel Segura-Bedmar, Paloma Martínez, María Herrero Zazo, (2013). SemEval-2013 Task 9 : Extraction of Drug-Drug Interactions from Biomedical Texts (DDIExtraction 2013),, Second Joint Conference on Lexical and Computational Semantics (*SEM), Volume 2: Proceedings of the Seventh International Workshop on Semantic Evaluation (SemEval 2013),, Atlanta, USA, June, 2013, Association for Computational Linguistics, pp: 341--350, url.

  • Sara Lana Serrano, Daniel Sanchez-Cisneros, Leonardo Campillos Llanos, Isabel Segura-Bedmar, (2013). Recognizing Chemical Compounds and Drugs: a Rule-Based Approach Using Semantic Information., Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, October, 2013, Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, vol. 2., pp: 121, pdf.

  • Daniel Sanchez-Cisneros, Paloma Martínez, Isabel Segura-Bedmar, (2013). Combining Dictionaries and Ontologies for Drug Name Recognition in Biomedical Texts, The Seventh International Workshop on Data and Text Mining in Biomedical Informatics, San Francisco, California, USA, November, 2013, Proceedings of the Seventh International Workshop on Data and Text Mining in Biomedical Informatics, ACM 978-1-4503-2419-9/13/11, url.

  • Daniel Sanchez-Cisneros, Sara Lana Serrano, Isabel Segura-Bedmar, Leonardo Campillos Llanos, Paloma Martínez, (2013). A web prototype for detecting chemical compounds and drugs. , Semantic Web Applications and tools for life sciences (SWAT4LS) Workshop, Edinburgh, United Kingdom, December, 2013, A web prototype for detecting chemical compounds and drugs, pdf.

  • María Herrero Zazo, Janna Hastings, Isabel Segura-Bedmar, Samuel Croset, Paloma Martínez, Christoph Steinbeck, (2013). An ontology for drug-drug interactions, Semantic Web Applications and tools for life sciences (SWAT4LS) Workshop, Edimburg, United Kingdom, December, 2013, pdf.

  • Daniel Sanchez-Cisneros, Isabel Segura-Bedmar, Paloma Martínez, (2011). DDIExtractor: A web-based java tool for extracting Drug-Drug Interactions from biomedical texts., NLDB 2011 (16th international conference on applications of natural language to information system), Alicante, España, June, 2011, Lecture Notes in Computer Science, 2011, 6716, pp: 4, url.

  • Isabel Segura-Bedmar, Paloma Martínez, Daniel Sanchez-Cisneros, (2011). The 1st DDIExtraction-2011 Challenge Task: Extraction of Drug-Drug Interactions from Biomedical Texts , Huelva, September, 2011, Proceedings of the 1st Challenge Task on Drug-Drug Interaction Extraction 2011, 761, pp: 1-9, url.

  • Isabel Segura-Bedmar, Mario Crespo, César de Pablo-Sánchez, Paloma Martínez, (2010). Score-based approach for Anaphora Resolution in Drug-Drug Interactions Documents, April, 2010, Natural Language Processing and Information Systems, Springer Berlin / Heidelberg, ISBN: 978-3-642-125, ISSN: 0302-9743, 5723/2010, pp: 91-102, url.

  • Isabel Segura-Bedmar, Paloma Martínez, César de Pablo-Sánchez, (2010). Combining syntactic information and domain-specific lexical patterns to extract Drug-Drug Interactions from biomedical texts., Toronto, Canada, October, 2010, ACM Fourth International Workshop on Data and Text Mining in Bioinformatics (DTMBIO 10)., ACM.

  • Isabel Segura-Bedmar, Mario Crespo, César de Pablo-Sánchez, Paloma Martínez, (2009). DrugNerAR: Linguistic Rule-Based Anaphora Resolver for Drug-Drug Interaction Extraction in Pharmacological Documents, Hong Kong, China, October, 2009, Proceeding of the ACM Third International Workshop on Data and Text Mining in Bioinformatics, ACM, ISBN: 978-1-60558-8, url.

  • Roxana Danger, Isabel Segura-Bedmar, Paloma Martínez, Paolo Rosso, (2009). Detecting Drug-Target articles by NLP Techniques., Colmenarejo, España, February, 2009, II Jornadas PLN-TIMM, pp: 85-88.

  • Sergio Aparicio, Isabel Segura-Bedmar, (2009). Resolución de expresiones anafóricas en textos biomédicos., Colmenarejo, España, February, 2009, III Jornadas PLN-TIMM, pp: 47-48.

  • César de Pablo-Sánchez, Juan Ignacio Perea Moraleda, Isabel Segura-Bedmar, Paloma Martínez, (2009). The UC3M team at the Knowledge Base Population task, Working Notes of the Text Analysis Conference (TAC 2009), November, 2009, pdf.

  • Isabel Segura-Bedmar, Paloma Martínez, Doaa Samy, (2008). A preliminary approach to recognize generic drug names by combining UMLS resources and USAN naming conventions., Ohio, USA, June, 2008, Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP), Association for Computational Linguistics, ISBN: 978-1-932432-, pp: 100-101, pdf.

  • Isabel Segura-Bedmar, Doaa Samy, José Luis Martínez Fernández, Paloma Martínez, (2007). Detecting Semantic Relations between Nominals using Support Vector Machines and Linguistic-Based Rules, Portugal, November, 2007, On the Move to Meaningful Internet Systems 2007: OTM 2007 Workshops, Springer Berlin / Heidelberg, ISBN: 978-3-540-768, ISSN: 0302-9743, pp: 1267-1273, url.

  • Isabel Segura-Bedmar, Doaa Samy, José Luis Martínez Fernández, (2007). UC3M: Classification of Semantic Relations between Nominals using Sequential Minimal Optimization, Praga, Republica Checa, January, 2007, Proceedings of the 4th International Workshop on Semantic Evaluations (SEMEVAL), Association for Computational Linguistics, pp: 382-385 , pdf.

  • Isabel Segura-Bedmar, José Luis Martínez Fernández, Paloma Martínez, (2006). Including deeper semantic information in the Lexical Markup Framework: a proposal., Lubjana, Eslovenia, October, 2006, Fifth Slovenian and First International Language Technologies Conference, IS-LTC 2006., pdf.

National Journals

National Conferences

  • Roxana Danger, Isabel Segura-Bedmar, Paloma Martínez, Paolo Rosso. (2009). Detecting Drug-Target articles by NLP Techniques. III Jornadas PLN-TIMM, Madrid, Spain, February 5-6, pp. 85-88.
  • Sergio Aparicio, Segura-Bedmar I. (2009) Resolución de expresiones anafóricas en textos biomédicos. III Jornadas PLN-TIMM, Madrid, Spain, February 5-6, pp. 47-48.

Research Projects

  • MA2VICMR: Mejorando el acceso, el análisis y la visibilidad de la información y los contenidos multilingües y multimedia en red para la Comunidad de Madrid
  • Semantic Interoperability in Electronic Healthcare (ISSE). PROFIT project (FIT-350300-2007-75), Spanish Ministry of Industry, Tourism and Trade Affairs. January/2007 - Decembre/2008.
  • Advanced Multimodal and Multilingual Question Answering (BRAVO) . TIC2000-1594-C02-02, Spanish Ministry of Science and Technology, October/2007 – August/2010.
  • Integration Architecture in the Semantic Web. TIN2005-09098-C05-02, Spanish Ministry of Science and Technology, December/2005-December 2008.
  • BUSCAMEDIA: Towards a semantic adaptation of multinetwork-multiterminal digital media. Daedalus. 10/09/2009-10/12/2012
  • Mavir: Improving the Access and Visibility of Multilingual Information in the Network, http://www.mavir.net). CAM-CONSEJERIA EDUCACION DIR. GRAL. UNIVERSIDADES E INVESTIGACION 01/01/2006 31/12/2009.
  • Thuban: Plataforma de Interacción natural para el acompañamiento virtual en entornos reales. Spanish Ministry of Science and Innovation. 01/01/2009-31/12/2011.
  • MULTIMEDICA: Extracción de Información Multilingüe en Sanidad y su aplicación a Documentación Científica y Divulgativa (TIN2010-20644-C03-01)

Research Stays

  • Natural Language Engineering and Pattern Recognition Group (EliRF). Polytechnic University of Valencia, Valencia. 1/07/08 – 1/10/08.
  • Language Technology. German Research Center for Artificial Intelligence (DFKI). 20/06/09 – 20/12/10.

http://www.madrimasd.org/informacionidi/noticias/noticia.asp?id=41745&tipo=g

The main goal is to research and develop methods and tools to extract information from biomedical literature. Nowadays, our research is focused on extracting drug-drug interactions from biomedical texts.

Artículo publicado el 20 de diciembre de 2009 en la revista ÉPOCA

Automatic detection of drug targets from biomedical texts is also our research topic. This can be very useful for the pharmaceutical industry since it can provide automatic tools to improve the automatic detection of drug targets and drug discovery process.

 

Recursos

Corpus DrugDDI

Corpus DrugNER

Corpus DrugNeRAr

  • Estructura de Datos y Algoritmos. Segundo Cuatrimestre. Primer curso del grado de Ingeniería Informática.
  • Tecnologías Emergentes de la Sociedad de la Información. Máster en Ciencia y Tecnología Informática.

Director:

Félix García Carballeira

 

Subdirectores:

Inés María Galván León

Juan Manuel Estévez Tapiador

 

Secretaria:

Ana María Iglesias Maqueda

 

Secretaría Administrativa:

María José Cano Barquilla

Javier Delicado Huelva

Rafaela Jiménez Mejías

 

Teléfono:

91 6249960

 

Fax:

91 6249129

 

Dirección Postal:

Avda. de la Universidad Nº 30

Edificio Sabatini

28911 Leganés

(Madrid) SPAIN

 

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